{"id":192,"date":"2023-01-28T14:43:51","date_gmt":"2023-01-28T05:43:51","guid":{"rendered":"https:\/\/best-biostatistics.com\/toukei-er\/entry\/line-chart-of-median-and-iqr-in-r\/"},"modified":"2025-01-14T22:55:42","modified_gmt":"2025-01-14T13:55:42","slug":"line-chart-of-median-and-iqr-in-r","status":"publish","type":"post","link":"https:\/\/best-biostatistics.com\/toukei-er\/entry\/line-chart-of-median-and-iqr-in-r\/","title":{"rendered":"R \u3067\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3092\u63cf\u304f\u65b9\u6cd5"},"content":{"rendered":"\n<p>\u53cd\u5fa9\u6e2c\u5b9a\u30c7\u30fc\u30bf\u3092\u7528\u3044\u3066\u3001\u6642\u70b9\u3054\u3068\u306e\u4e2d\u592e\u5024\u3092\u8a08\u7b97\u3057\u305f\u5f8c\u3001\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3092\u66f8\u304f\u65b9\u6cd5<\/p>\n\n\n\n<!--more-->\n\n\n\n<h2 class=\"wp-block-heading\" id=\"\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u524d\u306b-\u5e73\u5747\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\">\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u524d\u306b \u5e73\u5747\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5<\/h2>\n\n\n\n<p>\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u524d\u306b\u3001\u5e73\u5747\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3092\u793a\u3059<\/p>\n\n\n\n<p>\u3053\u3053\u3067\u306f\u3001\u5e73\u5747\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3068\u306f\u3001\u4ee5\u4e0b\u306e\u3088\u3046\u306a\u30b0\u30e9\u30d5\u3092\u8a00\u3063\u3066\u3044\u308b<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"672\" height=\"672\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128141431.png\" alt=\"\" class=\"wp-image-1101\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128141431.png 672w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128141431-300x300.png 300w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128141431-150x150.png 150w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<p>\u7e26\u8ef8\u306b\u30a2\u30a6\u30c8\u30ab\u30e0\u306e\u5024\u3001\u6a2a\u8ef8\u306b\u53cd\u5fa9\u6e2c\u5b9a\u306e\u6642\u70b9\u3092\u914d\u7f6e\u3059\u308b<\/p>\n\n\n\n<p>\u5404\u6642\u70b9\u306e\u5370\u304c\u30a2\u30a6\u30c8\u30ab\u30e0\u306e\u5e73\u5747\u5024\u3067\u3001\u4e0a\u4e0b\u306e\u7dda\u304c\u6a19\u6e96\u504f\u5dee\u3092\u793a\u3057\u3066\u3044\u308b<\/p>\n\n\n\n<p>\u3053\u308c\u3092\u3001\u4e2d\u592e\u5024\u3068\u56db\u5206\u4f4d\u7bc4\u56f2\u3067\u8868\u73fe\u3059\u308b\u306b\u306f\u3069\u3046\u3059\u308c\u3070\u3088\u3044\u304b\uff1f<\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u66f8\u304d\u65b9-\u30b0\u30eb\u30fc\u30d7\u5206\u3051\u7121\u3057\">\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u66f8\u304d\u65b9 \u30b0\u30eb\u30fc\u30d7\u5206\u3051\u7121\u3057<\/h2>\n\n\n\n<p>\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3092\u3001\u30b0\u30eb\u30fc\u30d7\u5206\u3051\u7121\u3057\u306e 1 \u7fa4\u306e\u5834\u5408\u3067\u3001\u66f8\u3044\u3066\u307f\u308b<\/p>\n\n\n\n<p>R \u3092\u7528\u3044\u308b<\/p>\n\n\n\n<p>\u7528\u3044\u308b\u30b5\u30f3\u30d7\u30eb\u30c7\u30fc\u30bf\uff08 FCZ_CSA_2_LMM \uff09\u306e\u5909\u6570\u540d\u306e\u610f\u5473\u306f\u4ee5\u4e0b\u306e\u901a\u308a<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>WeeksNum: \u53cd\u5fa9\u6e2c\u5b9a\u306e\u6642\u70b9\uff08 4 \u6642\u70b9\uff09<\/li>\n\n\n\n<li>CDratio: \u30a2\u30a6\u30c8\u30ab\u30e0\u5909\u6570\uff08\u9023\u7d9a\u30c7\u30fc\u30bf\uff09<\/li>\n\n\n\n<li>group: \u30b0\u30eb\u30fc\u30d7\u5206\u3051\u5909\u6570\uff08 2 \u30b0\u30eb\u30fc\u30d7\uff09<\/li>\n<\/ul>\n\n\n\n<p>\u3053\u306e 3 \u5909\u6570\u3067\u3042\u308b<\/p>\n\n\n\n<p>\u6700\u521d\u306f 2 \u30b0\u30eb\u30fc\u30d7\u3092\u4e00\u7dd2\u306b\u6271\u3046<\/p>\n\n\n\n<p>dplyr \u30d1\u30c3\u30b1\u30fc\u30b8\u3068 ggplot2 \u30d1\u30c3\u30b1\u30fc\u30b8\u3092\u4f7f\u7528\u3059\u308b<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code><span class=\"synPreProc\">library<\/span><span class=\"synSpecial\">(<\/span>dplyr<span class=\"synSpecial\">)<\/span>\n<span class=\"synPreProc\">library<\/span><span class=\"synSpecial\">(<\/span>ggplot2<span class=\"synSpecial\">)<\/span>\n<\/code><\/pre>\n\n\n\n<p>group_by() \u3067\u6642\u70b9\u3092\u6307\u5b9a\u3057\u3066\u3001\u4e2d\u592e\u5024\u3001\u7b2c 1 \u56db\u5206\u4f4d\u3001\u7b2c 3 \u56db\u5206\u4f4d\u3092\u8a08\u7b97\u3059\u308b<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>time_median &lt;-\n  FCZ_CSA_2_LMM %>%\n  group_by(WeeksNum) %>%\n  summarise(\n    median=median(CDratio),\n    q1=quantile(CDratio, 0.25),\n    q3=quantile(CDratio, 0.75)\n  )\ntime_median\n<\/code><\/pre>\n\n\n\n<p>\u3053\u306e\u3088\u3046\u306b\u6642\u70b9\u3054\u3068\u306b\u96c6\u8a08\u3055\u308c\u308b<\/p>\n\n\n\n<figure class=\"wp-block-image\"><img decoding=\"async\" src=\"https:\/\/cdn-ak.f.st-hatena.com\/images\/fotolife\/t\/toukeier\/20230128\/20230128142349.png\" alt=\"\" title=\"\"\/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<p>\u3053\u308c\u3092\u30b0\u30e9\u30d5\u306b\u3059\u308b\u30b9\u30af\u30ea\u30d7\u30c8\u306f\u4ee5\u4e0b\u306e\u3088\u3046\u306b\u306a\u308b<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>ggplot(data=time_median, aes(x=WeeksNum, y=median))+\n  geom_line()+\n  geom_point(size=3)+\n  geom_errorbar(aes(ymin=q1, ymax=q3), width=0.2)+\n  labs(x='Week', y='CDratio')\n<\/code><\/pre>\n\n\n\n<p>geom_line() \u3067\u7dda\u30b0\u30e9\u30d5\u3092\u6307\u5b9a\u3057\u3066\u3044\u3066\u3001geom_point() \u3067\u30d7\u30ed\u30c3\u30c8\u3059\u308b\u6307\u5b9a\u3068\u3001\u5927\u304d\u3055\u306e\u6307\u5b9a\u3001geom_errorbar() \u3067\u30a8\u30e9\u30fc\u30d0\u30fc\u3092 \u7b2c 1 \u56db\u5206\u4f4d\u304b\u3089\u7b2c 3 \u56db\u5206\u4f4d\u307e\u3067\u66f8\u304f\u6307\u5b9a\u3092\u3057\u3066\u3044\u308b<\/p>\n\n\n\n<p>\u30b0\u30e9\u30d5\u306f\u4ee5\u4e0b\u306e\u3088\u3046\u306b\u66f8\u304b\u308c\u308b<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"672\" height=\"672\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142631.png\" alt=\"\" class=\"wp-image-1103\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142631.png 672w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142631-300x300.png 300w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142631-150x150.png 150w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<p>\u30a8\u30e9\u30fc\u30d0\u30fc\u3092\u30af\u30ed\u30b9\u30d0\u30fc\u306b\u5909\u66f4\u3059\u308b\u3053\u3068\u304c\u3067\u304d\u308b<\/p>\n\n\n\n<p>\u30af\u30ed\u30b9\u30d0\u30fc\u3068\u306f\u7bb1\u3072\u3052\u56f3\u3092\u601d\u308f\u305b\u308b\u5f62\u3067\u3001\u4e2d\u592e\u5024\u3068\u56db\u5206\u4f4d\u7bc4\u56f2\u3067\u3042\u308b\u3053\u3068\u3092\u30a4\u30e1\u30fc\u30b8\u3067\u3082\u4f1d\u3048\u308b\u3053\u3068\u304c\u3067\u304d\u308b<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>ggplot(data=time_median, aes(x=WeeksNum, y=median))+\n  geom_line()+\n  geom_point(size=3)+\n  geom_crossbar(aes(ymin=q1, ymax=q3), width=0.4)+\n  labs(x='Week', y='CDratio')<\/code><\/pre>\n\n\n\n<p>geom_errorbar() \u304c geom_crossbar() \u306b\u5909\u308f\u3063\u3066\u3044\u308b<\/p>\n\n\n\n<p>\u30b0\u30e9\u30d5\u306f\u3053\u3093\u306a\u611f\u3058\u306b\u306a\u308b<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"672\" height=\"672\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142846.png\" alt=\"\" class=\"wp-image-1104\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142846.png 672w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142846-300x300.png 300w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128142846-150x150.png 150w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<div id=\"biost-2757481215\" class=\"biost- biost-entity-placement\"><p style=\"text-align: center;\"><span style=\"font-size: 20px;\"><strong><a href=\"https:\/\/best-biostatistics.com\/kmhl\">\uff1e\uff1e\u3082\u3046\u7d71\u8a08\u3067\u60a9\u3080\u306e\u306f\u7d42\u308f\u308a\u306b\u3057\u307e\u305b\u3093\u304b\uff1f\u00a0<\/a><\/strong><\/span><\/p>\r\n<a href=\"https:\/\/best-biostatistics.com\/kmhl\"><img class=\"aligncenter wp-image-2794 size-full\" src=\"https:\/\/best-biostatistics.com\/wp\/wp-content\/uploads\/2023\/11\/bn_r_03.png\" alt=\"\" width=\"500\" height=\"327\" \/><\/a>\r\n<p style=\"text-align: center;\"><span style=\"color: #ff0000; font-size: 20px;\"><strong><span class=\"marker2\">\u21911\u4e07\u4eba\u4ee5\u4e0a\u306e\u533b\u7642\u5f93\u4e8b\u8005\u304c\u8cfc\u8aad\u4e2d<\/span><\/strong><\/span><\/p><\/div><h2 class=\"wp-block-heading\" id=\"\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u66f8\u304d\u65b9-\u30b0\u30eb\u30fc\u30d7\u5206\u3051\u6709\u308a\">\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u66f8\u304d\u65b9 \u30b0\u30eb\u30fc\u30d7\u5206\u3051\u6709\u308a<\/h2>\n\n\n\n<p>\u30b0\u30eb\u30fc\u30d7\u5206\u3051\u304c\u3042\u308b\u5834\u5408\u306e\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u306e\u66f8\u304d\u65b9\u3092\u89e3\u8aac\u3059\u308b<\/p>\n\n\n\n<p>\u30b0\u30eb\u30fc\u30d7\u3054\u3068\u306b\u96c6\u8a08\u3059\u308b\u969b\u306b\u4f7f\u3063\u305f group_by() \u306b group \u3092\u8db3\u3059<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code>group_time_median &lt;-\n  FCZ_CSA_2_LMM %>%\n  group_by(group, WeeksNum) %>%\n  summarise(\n    median=median(CDratio),\n    q1=quantile(CDratio, 0.25),\n    q3=quantile(CDratio, 0.75)\n  )\ngroup_time_median<\/code><\/pre>\n\n\n\n<p>\u3059\u308b\u3068\u3001\u30b0\u30eb\u30fc\u30d7\u3054\u3068\u3001\u6642\u70b9\u3054\u3068\u306e\u96c6\u8a08\u5024\u304c\u6c42\u307e\u308b<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"600\" height=\"427\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143205.png\" alt=\"\" class=\"wp-image-1105\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143205.png 600w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143205-300x214.png 300w\" sizes=\"(max-width: 600px) 100vw, 600px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<p>\u3053\u306e\u96c6\u8a08\u5024\u3092\u4f7f\u3063\u3066\u3001\u30b0\u30e9\u30d5\u3092\u66f8\u3044\u3066\u3044\u304f<\/p>\n\n\n\n<p>\u5148\u307b\u3069\u3068\u540c\u69d8\u306b\u3001geom_errorbar() \u3092\u4f7f\u3063\u305f\u5834\u5408\u3068\u3001geom_crossbar() \u3092\u4f7f\u3063\u305f\u5834\u5408\u306e R \u30b9\u30af\u30ea\u30d7\u30c8\u306f\u4ee5\u4e0b\u306e\u901a\u308a<\/p>\n\n\n\n<pre class=\"wp-block-code\"><code># \u30a8\u30e9\u30fc\u30d0\u30fc\nggplot(data=group_time_median,\n       aes(x=WeeksNum, y=median, group=group, color=group))+\n  geom_line()+\n  geom_point(aes(color=group, shape=group), size=3)+\n  geom_errorbar(aes(ymin=q1, ymax=q3), width=0.2)+\n  labs(x='Week', y='CDratio')\n\n# \u30af\u30ed\u30b9\u30d0\u30fc\nggplot(data=group_time_median,\n       aes(x=WeeksNum, y=median, group=group, color=group))+\n  geom_line()+\n  geom_point(aes(color=group, shape=group), size=3)+\n  geom_crossbar(aes(ymin=q1, ymax=q3, width=0.3))+\n  labs(x='Week', y='CDratio')<\/code><\/pre>\n\n\n\n<p>color= \u3084 shape= \u3067\u8272\u3084\u5f62\u3092\u30b0\u30eb\u30fc\u30d7\u3054\u3068\u306b\u5206\u3051\u308b\u6307\u5b9a\u3092\u3057\u3066\u3044\u308b<\/p>\n\n\n\n<p>\u30a8\u30e9\u30fc\u30d0\u30fc\u306e\u30b0\u30e9\u30d5\u306f\u3053\u3061\u3089<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"672\" height=\"672\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143512.png\" alt=\"\" class=\"wp-image-1106\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143512.png 672w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143512-300x300.png 300w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143512-150x150.png 150w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<p>\u30af\u30ed\u30b9\u30d0\u30fc\u306e\u30b0\u30e9\u30d5\u306f\u3053\u3061\u3089<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" width=\"672\" height=\"672\" src=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143541.png\" alt=\"\" class=\"wp-image-1107\" title=\"\" srcset=\"https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143541.png 672w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143541-300x300.png 300w, https:\/\/best-biostatistics.com\/toukei-er\/wp-content\/uploads\/2023\/01\/20230128143541-150x150.png 150w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/figure>\n\n\n\n<p><span itemscope=\"\" itemtype=\"http:\/\/schema.org\/Photograph\"><\/span><\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"\u307e\u3068\u3081\">\u307e\u3068\u3081<\/h2>\n\n\n\n<p>\u4e2d\u592e\u5024\u306e\u6298\u308c\u7dda\u30b0\u30e9\u30d5\u3092\u56db\u5206\u4f4d\u7bc4\u56f2\u3092\u4ed8\u3051\u3066\u66f8\u304f\u65b9\u6cd5\u3092\u89e3\u8aac\u3057\u305f<\/p>\n\n\n\n<p>R \u3067 dplyr \u3068 ggplot2 \u3092\u4f7f\u3046\u3068\u66f8\u304f\u3053\u3068\u304c\u3067\u304d\u308b<\/p>\n\n\n\n<p>\u53c2\u8003\u306b\u306a\u308c\u3070<\/p>\n\n\n\n<h2 class=\"wp-block-heading\" 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